class: center, middle, inverse, title-slide # An example presentation ### Kelly Sovacool ### 2021-03-15 --- ## Managing Bioinformatics Pipelines .center[ <img src="data:image/png;base64,#https://snakemake2019.readthedocs.io/en/latest/_images/workflow_management.png" width="750"/> ] .footnote[ [snakemake.readthedocs.io](https://snakemake.readthedocs.io) ] ??? I ran about 20,000 jobs on the GreatLakes HPC for the OptiFit analysis project. --- ## Pipelines with <img src="data:image/png;base64,#https://raw.githubusercontent.com/snakemake/snakemake/f55801bfabfb916f77fa4ec8f9eb0667e5c8a92e/images/biglogo.png" height="35"/> .center[ <img src="data:image/png;base64,#https://raw.githubusercontent.com/snakemake/snakemake/f55801bfabfb916f77fa4ec8f9eb0667e5c8a92e/docs/project_info/img/idea.png" width="1000" /> ] .footnote[ [snakemake.readthedocs.io](https://snakemake.readthedocs.io) ] --- ## Tools for Reproducible Bioinformatics | package mgmt | scripts | reports | workflow | version control | |---|---|---|---|---| | <img src="data:image/png;base64,#https://docs.conda.io/en/latest/_images/conda_logo.svg" width="175"/> | <img src="data:image/png;base64,#https://longhowlam.files.wordpress.com/2017/04/rp.png" height="175"/> | <img src="data:image/png;base64,#https://ulyngs.github.io/rmarkdown-workshop-2019/slides/figures/rmarkdown.png" height="165"/> | <img src="data:image/png;base64,#https://avatars.githubusercontent.com/u/33450111?s=400&v=4" height="175"> |<img src="https://miro.medium.com/max/2625/1*8fPMdk2Cd5iJQ7dI7jXCbA.jpeg" height="175"/> | -- .center[ ### ...and headache prevention! ]