meek-ROPE em el
User-Friendly R Package for Supervised Machine Learning Pipelines
An interface to build machine learning models for classification and regression problems.
mikropml implements the ML pipeline described by Topçuoğlu et al. (2020) with reasonable default options for data preprocessing, hyperparameter tuning, cross-validation, testing, model evaluation, and interpretation steps. See the website for more information, documentation, and examples.
You can install the latest release from CRAN:
or the development version from GitHub:
# install.packages("devtools") devtools::install_github("SchlossLab/mikropml")
or install from a terminal using conda:
Check out the introductory vignette for a quick start tutorial. For a more in-depth discussion, read all the vignettes and/or take a look at the reference documentation. We also provide an example Snakemake workflow for running
mikropml on an HPC.
If you’d like to contribute, see our guidelines here.
Please note that the mikropml project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.
The word “mikrop” (pronounced “meek-ROPE”) is Turkish for “microbe”. This package was originally implemented as a machine learning pipeline for microbiome-based classification problems (see Topçuoğlu et al. 2020). We realized that these methods are applicable in many other fields too, but stuck with the name because we like it!