Changelog • schtools

schtools 0.4.1

CRAN release: 2023-01-16

set_knitr_opts() now sets message to FALSE (#45, @kelly-sovacool).
New function get_wildcards_tbl() returns the Snakemake wildcards list as a tibble (#46, @kelly-sovacool).

CRAN release: 2022-11-16

Fixes for API changes in ggplot2 v3.4.0 and tidyselect v1.2.0 (#42, #44, @kelly-sovacool).
pool_taxon_counts() now takes the taxon_level argument as a character rather than a data variable (#43, @kelly-sovacool).

CRAN release: 2022-10-05

New function log_snakemake() redirects all output to a rule-specific log file when called by a Snakemake rule (#35, @kelly-sovacool).
New function pool_taxon_counts() pools OTU counts at a particular taxonomic level (e.g. genus, phylum, etc.) to enable comparing analyses at different taxonomic resolutions, as seen in https://doi.org/10.1128/mbio.03161-21 (#37, @kelly-sovacool).
New function calc_relabun() calculates OTU relative abundances (#38, @kelly-sovacool).
New custom themes for ggplot2:
- theme_sovacool() (#39, @kelly-sovacool)
- theme_lucas() (#40, @sklucas)

CRAN release: 2022-05-11

Improvements to parse_tax() (#32, @kelly-sovacool).
- New column label_html provides HTML to correctly italicize genus names but not OTU labels.
- Added an example to the intro vignette to demonstrate using this feature with ggtext.
- Changed taxonomy data frame column names to lowercase and reordered them.
Minor documentation improvements (#33, @kelly-sovacool).

CRAN release: 2022-03-11

Refactored read_tax() (#30, @kelly-sovacool).
- New function parse_tax() to separate the logic of reading and parsing taxonomy files.
- read_tax() now accepts a sep parameter to handle different delim file types (e.g. csv or tsv).
schtools now has a logo! (#31, @kelly-sovacool)

CRAN release: 2021-11-22

This is the first release version of schtools! 🎉